Index
 

 

  

 

 


       Francisco J. Romero Campero

          Research Fellow Juan de la Cierva
         Group on Natural Computing                                                            
         Higher Technical School of Computer Engineering
         Faculty of Mathematics

         University of Seville  

      
         Journal Papers
     Conference Papers
     Book Chapters
   


 

 

Journal Papers

  • ChlamyNET: a Chlamydomonas gene co-expression network reveals global properties of the transcriptome and the early setup of key co-expression patterns in the green lineage.
    Francisco J. Romero-Campero, Ignacio Pérez Hurtado de Mendoza, Eva Lucas-Reina, José M. Romero, Federico Valverde
    BMC Genomics 2016 Mar 12;17(1):227. doi: 10.1186/s12864-016-2564-y. 2016.
    [ pdf ] [ bib ] [ http ]

  • An evolutionarily conserved DOF-CONSTANS module controls plant photoperiodic signalling.
    Eva Lucas-Reina, Francisco J. Romero-Campero, José M. Romero, Federico Valverde
    Plant Physiology, pii: pp.00321.2015. 2015.
    [ pdf ] [ bib ] [ http ]

  • The Glycerol-Dependent Metabolic Persistence of Pseudomonas putida KT2440 Reflects the Regulatory Logic of the GlpR Repressor
    Pablo I. Nikel, Francisco J. Romero-Campero, Joshua A. Zeidman, Ángel Goñi-Moreno, Víctor de Lorenzo
    mBio 6(2), doi: 10.1128/mBio.00340-15, 2015.
    [ pdf ] [ bib ] [ http ]

  • Photoperiodic control of carbon distribution during the floral transition in Arabidopsis thaliana
    M. Isabel Ortiz, Tomás Albi, Eva Lucas-Reina, Fatima E. Said, Franciso J. Romero-Campero, Beatriz Cano, María Teresa Ruiz, José M. Romero, Federico Valverde
    Plant Cell 26(2), 565-584, doi: 10.1105/tpc.114.122721, 2014.
    [ pdf ] [ bib ] [ http ]

  • A contribution to the study of plant development evolution based on gene co-expression networks
    Franciso J. Romero-Campero, Eva Lucas-Reina, Fatima E. Said, José M. Romero, Federico Valverde
    Frontiers in Plant Sciences 4:291. doi: 10.3389/fpls.2013.00291, 2013.
    [ pdf ] [ bib ] [ http ]

  • The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology
    Jonathan Blakes, Jamie Twycross, Francisco J. Romero-Campero, Natalio Krasnogor
    Bioinformatics, 27(23), 3323-3324, 2011.
    [ pdf ] [ bib ] [ http ]

  • A computational study of liposome logic: towards cellular computing from the bottom up.
    James Smaldon, Francisco J. Romero-Campero, Francisco Fernandez-Trillo, Marian Gheorghe, Cameron Alexander, Natalio Krasnogor.
    Systems and Synthetic Biology
    , 4(3), 157-179, 2010.
    [ pdf ] [ bib ] [ http ]
     
  • Evolving cell models for systems and synthetic biology.
    Hongqing Cao, Francisco J. Romero-Campero, Stephan Heeb, Miguel Cámara, Natalio Krasnogor
    Systems and Synthetic Biology, 4 (1), 55-84, 2010.
    [ pdf ] [ bib ] [ http ]
     
  • Deterministic and stochastic P systems for modelling cellular processes.
    Marian Gheorghe, Vincenzo Manca, Francisco J. Romero-Campero
    Natural Computing, 9 (2), 457 - 473, 2010
    [ pdf ] [ bib ] [ http ]
     
  • Modular Assembly of Cell Systems Biology Models Using P Systems.
    Francisco J. Romero-Campero, Jamie Twycross, Miguel Cámara, Malcolm Bennett, Marian Gheorghe,
    Natalio Krasnogor
    International Journal of Foundations of Computer Science, 20 (3), 427 - 442, 2009.
    [ pdf ] [ bib ] [ http ]
     
  • Modelling gene expression control using P systems: The Lac operon, a case study.
    Francisco J. Romero-Campero, Mario J. Pérez-Jiménez
    Biosystems, 91 (3), 438 - 457, 2008.
    [ pdf ] [ bib ] [ http ]
     
  • A Model of the Quorum Sensing System in Vibrio fischeri Using P Systems.
    Francisco J. Romero-Campero, Mario J. Pérez-Jiménez
    Artificial Life, 14 (1), 95 - 109, 2008.
    [ pdf ] [ bib ] [ http ]
     
  • A uniform solution to SAT using membrane creation.
    Miguel A. Gutiérrez-Naranjo, Mario J. Pérez-Jiménez, Francisco J. Romero-Campero
    Theoretical Computer Science, 371(1-2), 54-61, 2007.
    [ pdf ] [ bib ] [ http ]
  • Cellular modelling using P systems and process algebra.
    Francisco J. Romero-Campero, Marian Gheorghe, Gabriel Ciobanu, Jon M. Auld, Mario J. Pérez-Jiménez
    Progress in Natural Science, 17 (4), 375-383, 2007.
    [ pdf ] [ bib ] [ http ]
     
  • Simulating FAS-induced apoptosis by using P systems.
    Smitha Cheruku, Andrei Paun, Francisco J. Romero-Campero, Mario J. Pérez-Jiménez, Oscar H. Ibarra
    Progress in Natural Science, 17 (4), 424-431, 2007.
    [ pdf ] [ bib ] [ http ]
  • P Systems, a New Computational Modelling Tool for Systems Biology.
    Mario J. Pérez-Jiménez, Francisco J. Romero-Campero
    Transactions in Computational Systems Biology VI, 176-197, 2006.
    [ pdf ] [ bib ] [ http ]
     
  • Computational Efficiency of Dissolution Rules in Membrane Systems.
    Miguel A. Gutiérrez-Naranjo, Mario J. Pérez-Jiménez, Agustín Riscos-Núñez, Francisco J. Romero-Campero
    International Journal of Computer Mathematics, 83 (7), 593-611, 2006.
    [ pdf ] [ bib ] [ http ]
     
  • An Efficient Family of P Systems for Packing Items into Bins.
    Mario J. Pérez-Jiménez, Francisco J. Romero-Campero
    Journal of Universal Computer Science, 10(5), 650-670, 2004.
    [ pdf ] [ bib ] [ http ]


 

Conference Papers

  • Heterotic Computing Examples with Optics, Bacteria, and Chemicals.
    Susan Stepney, Samson Abramsky, Matthias Bechmann, Jerzy Gorecki, Viv Kendon, Thomas J. Naughton, Mario J. Perez-Jimenez, Francisco J. Romero-Campero, Angelika Sebald
    Unconventional Computation, UC 2012, September 3-7, Orlean, France.
    Lecture Notes in Computer Science, 7445, 198-209, 2012.

  • Membrane Computing (Tutorial).
    Ignacio Pérez-Hurtado, Mario J. Pérez-Jiménez, Agustín Riscos-Nuñez, Francisco J. Romero-Campero
    Unconventional Computation, UC 2011, Turku, June 6-10, Turku, Finland.
    Lecture Notes in Computer Science, 6714, 38-39, 2011.

  • An Approach to the Engineering of Cellular Models Based on P Systems.
    Francisco J. Romero-Campero, Natalio Krasnogor
    5th Conference on Computability in Europe, CiE 2009, July 19-24 , Heidelberg, Germany,
    Lecture Notes in Computer Science, 5635, 430 - 436, 2009.
    [ pdf ] [ bib ] [ http ]
     
  • Structure and Parameter Estimation for Cell Systems Biology Models
    Francisco J. Romero-Campero, Hongqing Cao, Miguel Cámara, Natalio Krasnogor
    Proc. of the Genetic and Evolutionary Computation Conference, July 12 - 16, Atlanta,
    USA, 331 - 338, 2008.
    [ pdf ] [ bib ] [ http ]
     

  • A Multiscale Modelling Framework Based On P Systems
    Francisco J. Romero-Campero, Jamie Twycross, Hongqing Cao, Jonathan Blakes,
    Natalio Krasnogor
    Workshop on Membrane Computing, July 28-31, Edinburgh, United Kingdom,
    Lecture Notes in Computer Science, 5391, 63 - 77, 2008.
    [ pdf ] [ bib ] [ http ]
     

  • A Hybrid Approach to Modelling Biological Systems.
    Francesco Bernardini, Marian Gheorghe, Francisco J. Romero-Campero, Neil Walkinshaw
    Lecture Notes in Computer Science, 4860, 138-159, 2007.
    [ pdf ] [ bib ] [ http ]
     
  • Modeling Signal Transduction Using P Systems.
    Andrei Paun, Mario J. Pérez-Jiménez, Francisco J. Romero-Campero
    Lecture Notes in Computer Science, 4361, 100-122, 2006.
    [ pdf ] [ bib ] [ http ]
     
  • Towards a P Systems Pseudomonas Quorum Sensing Model.
    Luca Bianco, Dario Pescini, Peter Siepmann, Natalio Krasnogor, Francisco J. Romero-Campero, Marian Gheorghe
    Lecture Notes in Computer Science, 4361, 197-214, 2006.
    [ pdf ] [ bib ] [ http ]
     
  • Towards Probabilistic Model Checking on P Systems Using PRISM.
    Francisco J. Romero-Campero, Marian Gheorghe, Luca Bianco, Dario Pescini, Mario J. Pérez-Jiménez, Rodica Ceterchi
    Lecture Notes in Computer Science, 4361, 477-495, 2006.
    [ pdf ] [ bib ] [ http ]
     
  • A Modeling Approach Based on P Systems with Bounded Parallelism.
    Francesco Bernardini, Francisco J. Romero-Campero, Marian Gheorghe, Mario J. Pérez-Jiménez
    Lecture Notes in Computer Science, 4361, 49-65, 2006.
    [ pdf ] [ bib ] [ http ]
  • A Linear Solution of Subset Sum Problem by Using Membrane Creation.
    Miguel A. Gutiérrez-Naranjo, Mario J. Pérez-Jiménez, Francisco J. Romero-Campero
    Lecture Notes in Computer Science, 3561, 258-267, 2005.
    [ pdf ] [ bib ] [ http ]
     
  • A Study of the Robustness of the EGFR Signalling Cascade Using Continuous Membrane Systems.
    Mario J. Pérez-Jiménez, Francisco J. Romero-Campero
    Lecture Notes in Computer Science, 3561, 268-278, 2005.
    [ pdf ] [ bib ] [ http ]
     

     

Book Chapters

  • Infobiotics Workbench: A P Systems Based Tool for Systems and Synthetic Biology
    Jonathan Blakes, Jamie Twycross, Savas Konur, Francisco Jose Romero-Campero, Natalio Krasnogor, Marian Gheorghe
    Applications of Membrane Computing in Systems and Synthetic Biology Emergence, Complexity and Computation Volume 7, ISBN 978-3-319-03191-0, 2014, pp 1-41
    [ pdf ] [ bib ] [ http ]
     
  • Probabilistic/Stochastic models
    Cazzaniga, P., Gheorghe, M., Krasnogor, N., Mauri, G., Pescini, D., Romero-Campero, F.J.
    The Oxford Handbook of Membrane Computing, Oxford University Press, 455 - 474, ISBN 978-0-19-9556, 455 - 474, 2010.
    [ pdf ] [ bib ] [ http ]
     
  • Membrane Computing as a Modeling Framework. Cellular Systems Case Studies.
    Gheorghe Paun, Francisco J. Romero-Campero
    In Formal Methods for Computational Systems Biology, Lecture Notes in Computer
    Science,
    5016, 168 - 214, 2008. 
    [ pdf ] [ bib ] [ http ]